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| Registros recuperados : 20 | |
| 1. |  | SILVA, H. T.; COSTA, C. N.; LOPES, P. S.; VERONEZE, R.; SILVA, F. F. e. Parâmetros genéticos para Stayabilityem bovinos da raça holandesa no Brasil. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 14., 2021, Santa Catarina. Passado, presente e futuro: anais. Santa Catarina: Sociedade Brasileira de Melhoramento Animal, 2021.| Biblioteca(s): Embrapa Gado de Leite. |
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| 2. | | CARRARA, E. R.; LOPES, P. S.; VERONEZE, R.; PEREIRA, R. J.; ZADRA, L. E. F.; PEIXOTO, M. G. C. D. Assessment of runs of homozygosity, heterozygosity-rich regions and genomic inbreeding estimates in a subpopulation of Guzerá (Bos indicus) dual-purpose cattle. Journal of Animal Breeding and Genetics, v. 141, n. 2, p. 207-219, 2024.| Biblioteca(s): Embrapa Gado de Leite. |
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| 3. | | VERNEQUE, R. da S.; VERONEZE, R.; PANETTO, J. C. do C.; SILVA, M. V. G. B.; TORAL, F. L. B. A contribuição do melhoramento animal para a pecuária de leite. In: VILELA, D.; FERREIRA, R. de P.; FERNANDES, E. N.; JUNTOLLI, F. V. (Ed.). Pecuária de leite no Brasil: cenários e avanços tecnológicos. Brasília, DF: Embrapa, 2016. p. 255-264.| Biblioteca(s): Embrapa Gado de Leite. |
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| 4. | | DIANA, T. F.; CALDERANO, A. A.; ROSTAGNO, H. S.; MARQUES, M. R. de L.; TAVERNARI, F. de C.; VERONEZE, R.; ALBINO, L. F. T. Apparent calcium retention and digestibility coefficients of limestone with different particle sizes in laying hens. Scientia Agricola, v. 80, n. e20210258, 2023.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 5. | | SILVA, H. T.; LOPES, P. S.; CARVALHEIRA, J.; SILVA, D. A.; SILVA, A. A.; SILVA, F. F.; VERONEZE, R.; THOMPSON, G.; COSTA, C. N. Autoregressive model for genetic evaluation of longitudinal reproductive traits in Brazilian Holstein cattle. Reproduction in Domestic Animals, v. 56, n. 3, p. 391-399, 2021.| Biblioteca(s): Embrapa Gado de Leite. |
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| 6. | | SILVA, D. A.; COSTA, C. N.; SILVA, A. A.; SILVA, H. T.; LOPES, P. S.; SILVA, F. F.; VERONEZE, R.; THOMPSON, G.; AGUILAR, I.; CARVALHEIRA, J. Autoregressive and random regression test-day models for multiple lactations in genetic evaluation of Brazilian Holstein cattle. Journal of Animal Breeding and Genetics, v. 137, n. 3, p. 305-315, 2020.| Biblioteca(s): Embrapa Gado de Leite. |
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| 7. | | SILVA, H. T.; LOPES, P. S.; COSTA, C. N.; SILVA, A. A.; SILVA, D. A.; SILVA, F. F.; VERONEZE, R.; THOMPSON, G.; CARVALHEIRA, J. Autoregressive single-step model for genomic evaluation of longitudinal reproductive traits in portuguese holstein cattle. Journal of Animal Breeding and Genetics, v. 138, n. 3, p. 349-359, 2021.| Biblioteca(s): Embrapa Gado de Leite. |
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| 8. | | SILVA, A. A.; SILVA, D. A.; LOPES, P. S.; SILVA, H. T.; VERONEZE, R.; THOMPSON, G.; COSTA, C. N.; CARVALHEIRA, J. SNP substitution effects for SCS changes across environmental gradients in Portuguese dairy cattle. In: ANNUAL MEETING OF THE EUROPEAN FEDERATION OF ANIMAL SCIENCE, 73., 2022, Porto. Book of abstracts... Rome: European Federation of Animal Science, 2022. p. 136.| Biblioteca(s): Embrapa Gado de Leite. |
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| 9. | | SILVA, A. A.; SILVA, D. A.; SILVA, F. F.; COSTA, C. N.; SILVA, H. T.; LOPES, P. S.; VERONEZE, R.; THOMPSON, G.; CARVALHEIRA, J. GWAS and gene networks for milk-related traits from test-day multiple lactations in Portuguese Holstein cattle. Journal of Applied Genetics, v. 61, p. 465-476, 2020.| Biblioteca(s): Embrapa Gado de Leite. |
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| 10. | | SILVA, A. A.; SILVA, D. A.; LOPES, P. S.; SILVA, H. T.; VERONEZE, R.; THOMPSON, G.; CARVALHEIRA, J.; COSTA, C. N. Genomic predictions including unknown parent groups for milk traits in Portuguese Holstein cattle. In: ANNUAL MEETING OF THE EUROPEAN FEDERATION OF ANIMAL SCIENCE, 73., 2022, Porto. Book of abstracts... Rome: European Federation of Animal Science, 2022. p. 135.| Biblioteca(s): Embrapa Gado de Leite. |
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| 11. | | SILVA, D. A.; LOPES, P. S.; COSTA, C. N.; SILVA, A. A.; SILVA, H. T.; SILVA, F. F.; VERONEZE, R.; THOMPSON, G.; CARVALHEIRA, J. Genotype by environment interaction for Holstein cattle populations using autoregressive and within- and across-countrymulti-trait reaction norms test-day models. Animal, v. 15, 100084, 2021.| Biblioteca(s): Embrapa Gado de Leite. |
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| 12. | | SILVA, A. A.; SILVA, F. F.; SILVA, D. A.; SILVA, H. T.; COSTA, C. N.; LOPES, P. S.; VERONEZE, R.; THOMPSON, G.; CARVALHEIRA, J. Genotype imputation strategies for Portuguese Holstein cattle using different SNP panels. Czech Journal of Animal Science, v. 64, n. 9, p. 377-386, 2019.| Biblioteca(s): Embrapa Gado de Leite. |
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| 13. | | SOARES, T. L. da S.; SANTOS, F. L. C.; PEIXOTO, M. G. C. D.; CARRARA, E. R.; BRUNELI, F. A. T.; VERONEZE, R.; LOPES, P. S. A interação genótipo-ambiente já afeta características leiteiras e idade ao primeiro parto em animais Guzerá. Revista Guzerate, ano 2, n. 2, p. 66-70, maio 2023.| Biblioteca(s): Embrapa Gado de Leite. |
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| 14. | | COSTA, E. V.; DINIZ, D. B.; VERONEZE, R.; RESENDE, M. D. V. de; AZEVEDO, C. F.; GUIMARÃES, S. E. F.; SILVA, F. F.; LOPES, P. S. Estimating additive and dominance variances for complex traits in pigs combining genomic and pedigree information. Genetics and Molecular Research, v. 14, n. 2, p. 6303-6311, June 2015.| Biblioteca(s): Embrapa Florestas. |
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| 15. | | CARRARA, E. R.; LOPES, P. S.; REIS, A. C. Z.; SILVA, J. X.; DIAS, L. C. de C. M.; SCHULTZ, E. B.; MARQUES, D. B. D.; SILVA, D. A. da; VERONEZE, R.; ANDRADE, R. G.; PEIXOTO, M. G. C. D. NASA POWER satellite meteorological system is a good tool for obtaining estimates of the temperature-humidity index under Brazilian conditions compared to INMET weather stations data. International Journal of Biometeorology, v. 67, n. 7, p. 1273-1277, 2023.| Biblioteca(s): Embrapa Gado de Leite. |
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| 16. | | ROCHA, R. de F. B.; OTTO, P. I.; SILVA, M. V. G. B.; MARTINS, M. F.; MACHADO, M. A.; VERONEZE, R.; LEANDRO, F. D.; PEREIRA, S. M.; GUIMARÃES, S. E. F.; PANETTO, J. C. do C. Repeatability and random regression models to estimate genetic parameters for oocyte and embryo production in the Gir breed. Animal Production Science, v. 62, n. 17, p. 1661-1670, 2022.| Biblioteca(s): Embrapa Gado de Leite. |
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| 17. | | DUARTE, D. A. S.; FORTES, M. R. S.; DUARTE, M. de S.; GUIMARÃES, S. E. F.; VERARDO, L. L.; VERONEZE, R.; RIBEIRO, A. M. F.; LOPES, P. S.; RESENDE, M. D. V. de; SILVA, F. F. e. Genome-wide association studies, meta-analyses and derived gene network for meat quality and carcass traits in pigs. Animal Production Science, v. 58, n. 6, p. 1100-1008, May 2018.| Biblioteca(s): Embrapa Florestas. |
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| 18. | | CARRARA, E. R.; PEIXOTO, M. G. C. D.; SILVA, A. A. da; BRUNELI, F. A. T.; VENTURA, H. T.; ZADRA, L. E. F.; JOSAHKIAN, L. A.; VERONEZE, R.; LOPES, P. S. Genomic prediction in Brazilian Guzerá cattle: application of a single-step approach to productive and reproductive traits. Tropical Animal Health and Production, v. 55, article 48, 2023.| Biblioteca(s): Embrapa Gado de Leite. |
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| 19. | | CARRARA, E. R.; PEIXOTO, M. G. C. D.; VERONEZE, R.; SILVA, F. F. e; RAMOS, P. V. B.; BRUNELI, F. A. T.; ZADRA, L. E. F.; VENTURA, H. T.; JOSAHKIAN, L. A.; LOPES, P. S. Genetic study of quantitative traits supports the use of Guzerá as dual-purpose cattle. Animal Bioscience, v. 35, n. 7, p. 955-963, 2022.| Biblioteca(s): Embrapa Gado de Leite. |
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| 20. | | OTTO, P. I.; GUIMARÃES, S. E. F.; VERARDO, L. L.; AZEVEDO, A. L. S.; VANDENPLAS, J.; SOARES, A. C. C.; SEVILLANO, C. A.; VERONEZE R; PIRES, M. de F. A.; FREITAS, C. de; PRATA, M. C. de A.; FURLONG, J.; VERNEQUE, R. da S.; MARTINS, M. F.; PANETTO, J. C. do C.; CARVALHO, W. A.; GOBO, D. O. R.; SILVA, M. V. G. B.; MACHADO, M. A. Genome-wide association studies for tick resistance in Bos taurus × Bos indicus crossbred cattle: A deeper look into this intricate mechanism. Journal of Dairy Science, v. 101, n. 12, p. 11020-11032, 2018.| Biblioteca(s): Embrapa Gado de Leite. |
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| Registros recuperados : 20 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com cnpgl.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
01/12/2023 |
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Data da última atualização: |
15/02/2024 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
CARRARA, E. R.; LOPES, P. S.; VERONEZE, R.; PEREIRA, R. J.; ZADRA, L. E. F.; PEIXOTO, M. G. C. D. |
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Afiliação: |
UNIVERSIDADE FEDERAL DE VIÇOSA; UNIVERSIDADE FEDERAL DE VIÇOSA; UNIVERSIDADE FEDERAL DE VIÇOSA; UNIVERSIDADE FEDERAL DE RONDONÓPOLIS; CENTRO BRASILEIRO DE MELHORAMENTO GENÉTICO DO GUZERÁ; MARIA GABRIELA CAMPOLINA DINIZ PEIX, CNPGL. |
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Título: |
Assessment of runs of homozygosity, heterozygosity-rich regions and genomic inbreeding estimates in a subpopulation of Guzerá (Bos indicus) dual-purpose cattle. |
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Ano de publicação: |
2024 |
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Fonte/Imprenta: |
Journal of Animal Breeding and Genetics, v. 141, n. 2, p. 207-219, 2024. |
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DOI: |
https://doi.org/10.1111/jbg.12836 |
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Idioma: |
Inglês |
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Conteúdo: |
For decades, inbreeding in cattle has been evaluated using pedigree information. Nowadays, inbreeding coefficients can be obtained using genomic information such as runs of homozygosity (ROH). The aims of this study were to quantify ROH and heterozygosity-rich regions (HRR) in a subpopulation of Guzerá dual-purpose cattle, to examine ROH and HRR islands, and to compare inbreeding coefficients obtained by ROH with alternative genomic inbreeding coefficients. A subpopulation of 1733 Guzerá animals genotyped for 50k SNPs was used to obtain the ROH and HRR segments. Inbreeding coefficients by ROH (FROH), by genomic relationship matrix based on VanRaden's method 1 using reference allele frequency in the population (FGRM), by genomic relationship matrix based on VanRaden's method 1 using allele frequency fixed in 0.5 (FGRM_0.5), and by the proportion of homozygous loci (FHOM) were calculated. A total of 15,660 ROH were identified, and the chromosome with the highest number of ROH was BTA6. A total of 4843 HRRs were identified, and the chromosome with the highest number of HRRs was BTA23. No ROH and HRR islands were identified according to established criteria, but the regions closest to the definition of an island were examined from 64 to 67 Mb of BTA6, from 36 to 37 Mb of BTA2 and from 0.50 to 1.25 Mb of BTA23. The genes identified in ROH islands have previously been associated with dairy and beef traits, while genes identified on HRR islands have previously been associated with reproductive traits and disease resistance. FROH was equal to 0.095 ± 0.084, and its Spearman correlation with FGRM was low (0.44) and moderate-high with FHOM (0.79) and with FGRM_0.5 (0.80). The inbreeding coefficients determined by ROH were higher than other cattle breeds' and higher than pedigree-based inbreeding in the Guzerá breed obtained in previous studies. It is recommended that future studies investigate the effects of inbreeding determined by ROH on the traits under selection in the subpopulation studied. MenosFor decades, inbreeding in cattle has been evaluated using pedigree information. Nowadays, inbreeding coefficients can be obtained using genomic information such as runs of homozygosity (ROH). The aims of this study were to quantify ROH and heterozygosity-rich regions (HRR) in a subpopulation of Guzerá dual-purpose cattle, to examine ROH and HRR islands, and to compare inbreeding coefficients obtained by ROH with alternative genomic inbreeding coefficients. A subpopulation of 1733 Guzerá animals genotyped for 50k SNPs was used to obtain the ROH and HRR segments. Inbreeding coefficients by ROH (FROH), by genomic relationship matrix based on VanRaden's method 1 using reference allele frequency in the population (FGRM), by genomic relationship matrix based on VanRaden's method 1 using allele frequency fixed in 0.5 (FGRM_0.5), and by the proportion of homozygous loci (FHOM) were calculated. A total of 15,660 ROH were identified, and the chromosome with the highest number of ROH was BTA6. A total of 4843 HRRs were identified, and the chromosome with the highest number of HRRs was BTA23. No ROH and HRR islands were identified according to established criteria, but the regions closest to the definition of an island were examined from 64 to 67 Mb of BTA6, from 36 to 37 Mb of BTA2 and from 0.50 to 1.25 Mb of BTA23. The genes identified in ROH islands have previously been associated with dairy and beef traits, while genes identified on HRR islands have previously been associated with ... Mostrar Tudo |
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Palavras-Chave: |
Autozigosidade; Autozygosity. |
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Thesagro: |
Bovino; Gado de Corte; Gado Guzerá; Gado Leiteiro; Marcador Genético. |
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Thesaurus NAL: |
Beef cattle; Dairy cattle; Genetic markers; Zebu. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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Marc: |
LEADER 03045naa a2200325 a 4500
001 2159024
005 2024-02-15
008 2024 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1111/jbg.12836$2DOI
100 1 $aCARRARA, E. R.
245 $aAssessment of runs of homozygosity, heterozygosity-rich regions and genomic inbreeding estimates in a subpopulation of Guzerá (Bos indicus) dual-purpose cattle.$h[electronic resource]
260 $c2024
520 $aFor decades, inbreeding in cattle has been evaluated using pedigree information. Nowadays, inbreeding coefficients can be obtained using genomic information such as runs of homozygosity (ROH). The aims of this study were to quantify ROH and heterozygosity-rich regions (HRR) in a subpopulation of Guzerá dual-purpose cattle, to examine ROH and HRR islands, and to compare inbreeding coefficients obtained by ROH with alternative genomic inbreeding coefficients. A subpopulation of 1733 Guzerá animals genotyped for 50k SNPs was used to obtain the ROH and HRR segments. Inbreeding coefficients by ROH (FROH), by genomic relationship matrix based on VanRaden's method 1 using reference allele frequency in the population (FGRM), by genomic relationship matrix based on VanRaden's method 1 using allele frequency fixed in 0.5 (FGRM_0.5), and by the proportion of homozygous loci (FHOM) were calculated. A total of 15,660 ROH were identified, and the chromosome with the highest number of ROH was BTA6. A total of 4843 HRRs were identified, and the chromosome with the highest number of HRRs was BTA23. No ROH and HRR islands were identified according to established criteria, but the regions closest to the definition of an island were examined from 64 to 67 Mb of BTA6, from 36 to 37 Mb of BTA2 and from 0.50 to 1.25 Mb of BTA23. The genes identified in ROH islands have previously been associated with dairy and beef traits, while genes identified on HRR islands have previously been associated with reproductive traits and disease resistance. FROH was equal to 0.095 ± 0.084, and its Spearman correlation with FGRM was low (0.44) and moderate-high with FHOM (0.79) and with FGRM_0.5 (0.80). The inbreeding coefficients determined by ROH were higher than other cattle breeds' and higher than pedigree-based inbreeding in the Guzerá breed obtained in previous studies. It is recommended that future studies investigate the effects of inbreeding determined by ROH on the traits under selection in the subpopulation studied.
650 $aBeef cattle
650 $aDairy cattle
650 $aGenetic markers
650 $aZebu
650 $aBovino
650 $aGado de Corte
650 $aGado Guzerá
650 $aGado Leiteiro
650 $aMarcador Genético
653 $aAutozigosidade
653 $aAutozygosity
700 1 $aLOPES, P. S.
700 1 $aVERONEZE, R.
700 1 $aPEREIRA, R. J.
700 1 $aZADRA, L. E. F.
700 1 $aPEIXOTO, M. G. C. D.
773 $tJournal of Animal Breeding and Genetics$gv. 141, n. 2, p. 207-219, 2024.
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